IL_5J30_042
3D structure
- PDB id
- 5J30 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermus thermophilus 70S termination complex containing E. coli RF1
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 5J30|1|QA|C|1054
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J30_042 not in the Motif Atlas
- Homologous match to IL_4LFB_044
- Geometric discrepancy: 0.0778
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_76319.5
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
5J30|1|QA|U|1052
5J30|1|QA|G|1053
5J30|1|QA|C|1054
5J30|1|QA|A|1055
5J30|1|QA|U|1056
*
5J30|1|QA|A|1204
5J30|1|QA|U|1205
5J30|1|QA|G|1206
Current chains
- Chain QA
- 16S rRNA
Nearby chains
- Chain QC
- 30S ribosomal protein S3
- Chain QJ
- 30S ribosomal protein S10
- Chain QN
- 30S ribosomal protein S14 type Z
- Chain QX
- messenger RNA
- Chain QY
- Peptide chain release factor 1
Coloring options: