IL_5J30_069

3D structure

PDB id

5J30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGGACAC*GUG

Length

10 nucleotides

Bulged bases

5J30|1|RA|C|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J30_069 not in the Motif Atlas

Homologous match to IL_8VTW_009

Geometric discrepancy: 0.5209

The information below is about IL_8VTW_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45612.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

14

Unit IDs

5J30|1|RA|C|273|||K
5J30|1|RA|G|274
5J30|1|RA|G|275
5J30|1|RA|A|276
5J30|1|RA|C|277
5J30|1|RA|A|278
5J30|1|RA|C|279
*
5J30|1|RA|G|361
5J30|1|RA|U|362
5J30|1|RA|G|363|||A

Current chains

Chain RA

23S rRNA

Nearby chains