IL_5J30_141

3D structure

PDB id

5J30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J30_141 not in the Motif Atlas

Homologous match to IL_7RQB_086

Geometric discrepancy: 0.2118

The information below is about IL_7RQB_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J30|1|RA|G|2124
5J30|1|RA|G|2125
5J30|1|RA|A|2126
5J30|1|RA|G|2127
*
5J30|1|RA|C|2161
5J30|1|RA|G|2162
5J30|1|RA|C|2163
5J30|1|RA|C|2164
5J30|1|RA|G|2165
5J30|1|RA|G|2166
5J30|1|RA|U|2167
5J30|1|RA|G|2168
5J30|1|RA|A|2169
5J30|1|RA|A|2170
5J30|1|RA|A|2171
5J30|1|RA|U|2172
5J30|1|RA|A|2173
5J30|1|RA|C|2174

Current chains

Chain RA

23S rRNA

Nearby chains