IL_5J30_286

3D structure

PDB id

5J30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAG*CGAAG

Length

9 nucleotides

Bulged bases

5J30|1|YA|A|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J30_286 not in the Motif Atlas

Homologous match to IL_7RQB_057

Geometric discrepancy: 0.0423

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5J30|1|YA|C|1437
5J30|1|YA|U|1438
5J30|1|YA|A|1439
5J30|1|YA|G|1440
*
5J30|1|YA|C|1551
5J30|1|YA|G|1552
5J30|1|YA|A|1553
5J30|1|YA|A|1554
5J30|1|YA|G|1555

Current chains

Chain YA

23S rRNA

Nearby chains