IL_5J30_314

3D structure

PDB id

5J30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

5J30|1|YA|G|2116, 5J30|1|YA|A|2117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J30_314 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.4102

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

5J30|1|YA|G|2110
5J30|1|YA|C|2111
5J30|1|YA|G|2112
5J30|1|YA|U|2113
5J30|1|YA|A|2114
5J30|1|YA|G|2115
5J30|1|YA|G|2116
5J30|1|YA|A|2117
5J30|1|YA|U|2118
5J30|1|YA|A|2119
5J30|1|YA|G|2120
*
5J30|1|YA|C|2178
5J30|1|YA|C|2179

Current chains

Chain YA

23S rRNA

Nearby chains