IL_5J30_356

3D structure

PDB id

5J30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

5J30|1|RA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J30_356 not in the Motif Atlas

Homologous match to IL_9DFE_067

Geometric discrepancy: 0.059

The information below is about IL_9DFE_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

5J30|1|RA|A|1669
5J30|1|RA|C|1670
5J30|1|RA|U|1671
5J30|1|RA|C|1672
5J30|1|RA|U|1673
5J30|1|RA|G|1674
*
5J30|1|RA|C|1990
5J30|1|RA|U|1991
5J30|1|RA|G|1992
5J30|1|RA|U|1993

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3

Chain RO

50S ribosomal protein L14