IL_5J3C_003

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

CCUAAG*UAG

Length

9 nucleotides

Bulged bases

5J3C|1|QA|C|48, 5J3C|1|QA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J3C_003 not in the Motif Atlas

Geometric match to IL_4LFB_003

Geometric discrepancy: 0.0742

The information below is about IL_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5J3C|1|QA|C|47
5J3C|1|QA|C|48
5J3C|1|QA|U|49
5J3C|1|QA|A|50
5J3C|1|QA|A|51
5J3C|1|QA|G|52
*
5J3C|1|QA|U|359
5J3C|1|QA|A|360
5J3C|1|QA|G|361

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain YI

50S ribosomal protein L9