IL_5J3C_111

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J3C_111 not in the Motif Atlas

Homologous match to IL_7RQB_053

Geometric discrepancy: 0.1122

The information below is about IL_7RQB_053

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

5J3C|1|RA|U|1357
5J3C|1|RA|G|1358
5J3C|1|RA|A|1359
5J3C|1|RA|A|1360
5J3C|1|RA|G|1361
*
5J3C|1|RA|C|1370
5J3C|1|RA|G|1371
5J3C|1|RA|U|1372
5J3C|1|RA|A|1373
5J3C|1|RA|G|1374

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain R7

50S ribosomal protein L34

Chain RD

50S ribosomal protein L2