IL_5J3C_121

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

5J3C|1|RA|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J3C_121 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.0644

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5J3C|1|RA|G|1526
5J3C|1|RA|G|1527
5J3C|1|RA|A|1528|||A
5J3C|1|RA|A|1528|||B
5J3C|1|RA|G|1529
*
5J3C|1|RA|U|1540
5J3C|1|RA|G|1541
5J3C|1|RA|A|1542
5J3C|1|RA|C|1543
5J3C|1|RA|A|1544
5J3C|1|RA|A|1545
5J3C|1|RA|C|1546

Current chains

Chain RA

23S rRNA

Nearby chains