IL_5J3C_194
3D structure
- PDB id
- 5J3C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermus thermophilus 70S termination complex containing E. coli RF1
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.04 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 5J3C|1|XA|A|532, 5J3C|1|XA|U|534
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J3C_194 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.0599
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5J3C|1|XA|G|515
5J3C|1|XA|PSU|516
5J3C|1|XA|G|517
5J3C|1|XA|C|518
5J3C|1|XA|C|519
5J3C|1|XA|A|520
5J3C|1|XA|G|521
*
5J3C|1|XA|C|528
5J3C|1|XA|G|529
5J3C|1|XA|G|530
5J3C|1|XA|U|531
5J3C|1|XA|A|532
5J3C|1|XA|A|533
5J3C|1|XA|U|534
5J3C|1|XA|A|535
5J3C|1|XA|C|536
Current chains
- Chain XA
- 16S rRNA
Nearby chains
- Chain XC
- 30S ribosomal protein S3
- Chain XD
- 30S ribosomal protein S4
- Chain XL
- 30S ribosomal protein S12
- Chain XX
- messenger RNA
- Chain XY
- Peptide chain release factor 1
Coloring options: