IL_5J3C_196
3D structure
- PDB id
- 5J3C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermus thermophilus 70S termination complex containing E. coli RF1
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.04 Å
Loop
- Sequence
- UGUAG*UGAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J3C_196 not in the Motif Atlas
- Homologous match to IL_4LFB_023
- Geometric discrepancy: 0.0857
- The information below is about IL_4LFB_023
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
5J3C|1|XA|U|580
5J3C|1|XA|G|581
5J3C|1|XA|U|582
5J3C|1|XA|A|583
5J3C|1|XA|G|584
*
5J3C|1|XA|U|757
5J3C|1|XA|G|758
5J3C|1|XA|A|759
5J3C|1|XA|G|760
5J3C|1|XA|G|761
Current chains
- Chain XA
- 16S rRNA
Nearby chains
- Chain XL
- 30S ribosomal protein S12
- Chain XO
- 30S ribosomal protein S15
- Chain XQ
- 30S ribosomal protein S17
- Chain YA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: