IL_5J3C_251

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5J3C|1|YA|G|801, 5J3C|1|YA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J3C_251 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0437

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5J3C|1|YA|G|674
5J3C|1|YA|A|675
5J3C|1|YA|A|676
5J3C|1|YA|A|677
5J3C|1|YA|C|678
*
5J3C|1|YA|G|799
5J3C|1|YA|A|800
5J3C|1|YA|G|801
5J3C|1|YA|A|802
5J3C|1|YA|U|803
5J3C|1|YA|A|804
5J3C|1|YA|G|805
5J3C|1|YA|C|806

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YF

50S ribosomal protein L4

Chain YP

50S ribosomal protein L15