IL_5J3C_350

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J3C_350 not in the Motif Atlas

Homologous match to IL_4LFB_067

Geometric discrepancy: 0.1035

The information below is about IL_4LFB_067

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

5J3C|1|QA|C|1259
5J3C|1|QA|C|1260
5J3C|1|QA|A|1261
5J3C|1|QA|C|1262
*
5J3C|1|QA|G|1273
5J3C|1|QA|G|1274
5J3C|1|QA|A|1275
5J3C|1|QA|G|1276

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QU

30S ribosomal protein Thx