IL_5J4B_009

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGGAC*GUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4B_009 not in the Motif Atlas

Homologous match to IL_8VTW_009

Geometric discrepancy: 0.2538

The information below is about IL_8VTW_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45612.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

14

Unit IDs

5J4B|1|1A|C|297
5J4B|1|1A|G|298
5J4B|1|1A|G|299
5J4B|1|1A|A|302
5J4B|1|1A|C|303
*
5J4B|1|1A|G|385
5J4B|1|1A|U|386
5J4B|1|1A|G|387

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains