IL_5J4B_043

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

5J4B|1|1A|A|1134

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4B_043 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.2216

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

5J4B|1|1A|G|1133
5J4B|1|1A|A|1134
5J4B|1|1A|G|1135
5J4B|1|1A|U|1136
5J4B|1|1A|G|1137
*
5J4B|1|1A|C|1146
5J4B|1|1A|U|1147
5J4B|1|1A|C|1148

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36