IL_5J4B_054

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

5J4B|1|1A|U|1466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4B_054 not in the Motif Atlas

Homologous match to IL_7RQB_055

Geometric discrepancy: 0.0631

The information below is about IL_7RQB_055

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

5J4B|1|1A|C|1463
5J4B|1|1A|G|1464
5J4B|1|1A|A|1465
5J4B|1|1A|U|1466
5J4B|1|1A|G|1467
*
5J4B|1|1A|C|1624
5J4B|1|1A|U|1625
5J4B|1|1A|A|1626
5J4B|1|1A|A|1627
5J4B|1|1A|G|1628

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains