IL_5J4B_062

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

5J4B|1|1A|C|1590

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4B_062 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.0569

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5J4B|1|1A|G|1572
5J4B|1|1A|G|1573
5J4B|1|1A|A|1574
5J4B|1|1A|A|1575
5J4B|1|1A|G|1576
*
5J4B|1|1A|U|1587
5J4B|1|1A|G|1588
5J4B|1|1A|A|1589
5J4B|1|1A|C|1590
5J4B|1|1A|A|1591
5J4B|1|1A|A|1592
5J4B|1|1A|C|1593

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains