IL_5J4B_095
3D structure
- PDB id
- 5J4B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CCGAG*CGGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4B_095 not in the Motif Atlas
- Homologous match to IL_7RQB_095
- Geometric discrepancy: 0.049
- The information below is about IL_7RQB_095
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_56467.8
- Basepair signature
- cWW-tSH-tSH-tHS-cWW
- Number of instances in this motif group
- 29
Unit IDs
5J4B|1|1A|C|2478
5J4B|1|1A|C|2479
5J4B|1|1A|G|2480
5J4B|1|1A|A|2481
5J4B|1|1A|G|2482
*
5J4B|1|1A|C|2492
5J4B|1|1A|G|2493
5J4B|1|1A|G|2494
5J4B|1|1A|C|2495
5J4B|1|1A|G|2496
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L36
- Chain 1Q
- 50S ribosomal protein L16
- Chain 1w
- Transfer RNA; tRNA
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