IL_5J4B_145
3D structure
- PDB id
- 5J4B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GGAAUU*AGGAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4B_145 not in the Motif Atlas
- Homologous match to IL_4LFB_030
- Geometric discrepancy: 0.0572
- The information below is about IL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04668.2
- Basepair signature
- cWW-cWW-cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 8
Unit IDs
5J4B|1|1a|G|673
5J4B|1|1a|G|674
5J4B|1|1a|A|675
5J4B|1|1a|A|676
5J4B|1|1a|U|677
5J4B|1|1a|U|678
*
5J4B|1|1a|A|712
5J4B|1|1a|G|713
5J4B|1|1a|G|714
5J4B|1|1a|A|715
5J4B|1|1a|A|716
5J4B|1|1a|C|717
Current chains
- Chain 1a
- 16S ribosomal RNA
Nearby chains
- Chain 1D
- 50S ribosomal protein L2
- Chain 1f
- 30S ribosomal protein S6
- Chain 1k
- 30S ribosomal protein S11
- Chain 1r
- 30S ribosomal protein S18
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