IL_5J4B_162

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GUUG*CACUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4B_162 not in the Motif Atlas

Homologous match to IL_6CZR_158

Geometric discrepancy: 0.2182

The information below is about IL_6CZR_158

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_40144.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

5J4B|1|1a|G|1124
5J4B|1|1a|U|1125
5J4B|1|1a|U|1126
5J4B|1|1a|G|1127
*
5J4B|1|1a|C|1145
5J4B|1|1a|A|1146
5J4B|1|1a|C|1147
5J4B|1|1a|U|1148
5J4B|1|1a|C|1149

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains

Chain 1i

30S ribosomal protein S9

Chain 1j

30S ribosomal protein S10