IL_5J4B_195

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5J4B|1|2A|G|801, 5J4B|1|2A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4B_195 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0357

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5J4B|1|2A|G|674
5J4B|1|2A|A|675
5J4B|1|2A|A|676
5J4B|1|2A|A|677
5J4B|1|2A|C|678
*
5J4B|1|2A|G|799
5J4B|1|2A|A|800
5J4B|1|2A|G|801
5J4B|1|2A|A|802
5J4B|1|2A|U|803
5J4B|1|2A|A|804
5J4B|1|2A|G|805
5J4B|1|2A|C|806

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15