IL_5J4B_213

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4B_213 not in the Motif Atlas

Homologous match to IL_5J7L_278

Geometric discrepancy: 0.1092

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

5J4B|1|2A|C|1004
5J4B|1|2A|C|1005
5J4B|1|2A|C|1006
5J4B|1|2A|C|1007
5J4B|1|2A|C|1008
5J4B|1|2A|A|1009
5J4B|1|2A|A|1010
5J4B|1|2A|G|1011
*
5J4B|1|2A|C|1150
5J4B|1|2A|G|1151

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2N

50S ribosomal protein L13

Chain 2U

50S ribosomal protein L20