IL_5J4B_235

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UG*CAACAAG

Length

9 nucleotides

Bulged bases

5J4B|1|2A|C|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4B_235 not in the Motif Atlas

Homologous match to IL_7RQB_061

Geometric discrepancy: 0.2493

The information below is about IL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52493.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

5J4B|1|2A|U|1481
5J4B|1|2A|G|1482
*
5J4B|1|2A|C|1506
5J4B|1|2A|A|1507
5J4B|1|2A|A|1508
5J4B|1|2A|C|1509
5J4B|1|2A|A|1509|||A
5J4B|1|2A|A|1509|||B
5J4B|1|2A|G|1510

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains