IL_5J4B_253
3D structure
- PDB id
- 5J4B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- ACGA*UCUAU
- Length
- 9 nucleotides
- Bulged bases
- 5J4B|1|2A|C|2055, 5J4B|1|2A|C|2612, 5J4B|1|2A|U|2613, 5J4B|1|2A|A|2614
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4B_253 not in the Motif Atlas
- Homologous match to IL_7RQB_079
- Geometric discrepancy: 0.0599
- The information below is about IL_7RQB_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_01206.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5J4B|1|2A|A|2054
5J4B|1|2A|C|2055
5J4B|1|2A|G|2056
5J4B|1|2A|A|2057
*
5J4B|1|2A|U|2611
5J4B|1|2A|C|2612
5J4B|1|2A|U|2613
5J4B|1|2A|A|2614
5J4B|1|2A|U|2615
Current chains
- Chain 2A
- 23S ribosomal RNA
Nearby chains
- Chain 25
- 50S ribosomal protein L32
- Chain 2E
- 50S ribosomal protein L3
- Chain 2F
- 50S ribosomal protein L4
- Chain 2W
- 50S ribosomal protein L22
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