IL_5J4B_285

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4B_285 not in the Motif Atlas

Homologous match to IL_7RQB_110

Geometric discrepancy: 0.0695

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

5J4B|1|2A|U|2847
5J4B|1|2A|G|2848
5J4B|1|2A|U|2849
5J4B|1|2A|A|2850
5J4B|1|2A|A|2851
5J4B|1|2A|G|2852
*
5J4B|1|2A|U|2865
5J4B|1|2A|U|2866
5J4B|1|2A|G|2867
5J4B|1|2A|A|2868
5J4B|1|2A|G|2869

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2R

50S ribosomal protein L17

Chain 2T

50S ribosomal protein L19