IL_5J4B_311

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4B_311 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.079

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

5J4B|1|2a|G|450
5J4B|1|2a|A|451
5J4B|1|2a|A|452
5J4B|1|2a|A|453
5J4B|1|2a|C|454
5J4B|1|2a|C|455
*
5J4B|1|2a|G|476
5J4B|1|2a|A|477
5J4B|1|2a|C|479
5J4B|1|2a|U|480
5J4B|1|2a|G|481
5J4B|1|2a|A|482
5J4B|1|2a|C|483

Current chains

Chain 2a

16S ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16