IL_5J4B_323

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

5J4B|1|2a|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4B_323 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.1005

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

5J4B|1|2a|G|683
5J4B|1|2a|A|684
5J4B|1|2a|G|685
5J4B|1|2a|U|686
5J4B|1|2a|A|687
5J4B|1|2a|G|688
*
5J4B|1|2a|C|699
5J4B|1|2a|G|700
5J4B|1|2a|C|701
5J4B|1|2a|A|702
5J4B|1|2a|G|703
5J4B|1|2a|A|704
5J4B|1|2a|U|705
5J4B|1|2a|A|706
5J4B|1|2a|C|707

Current chains

Chain 2a

16S ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2k

30S ribosomal protein S11