IL_5J4C_076
3D structure
- PDB id
- 5J4C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAAA(5MU)UC(5MC)UUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 5J4C|1|1A|A|1960, 5J4C|1|1A|C|1963, 5J4C|1|1A|U|1966, 5J4C|1|1A|U|1985
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4C_076 not in the Motif Atlas
- Geometric match to IL_4WF9_077
- Geometric discrepancy: 0.1181
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.1
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-tSW-L
- Number of instances in this motif group
- 8
Unit IDs
5J4C|1|1A|C|1956
5J4C|1|1A|G|1957
5J4C|1|1A|A|1958
5J4C|1|1A|A|1959
5J4C|1|1A|A|1960
5J4C|1|1A|5MU|1961
5J4C|1|1A|U|1962
5J4C|1|1A|C|1963
5J4C|1|1A|5MC|1964
5J4C|1|1A|U|1965
5J4C|1|1A|U|1966
5J4C|1|1A|G|1967
*
5J4C|1|1A|C|1983
5J4C|1|1A|5MC|1984
5J4C|1|1A|U|1985
5J4C|1|1A|G|1986
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 1D
- 50S ribosomal protein L2
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1w
- Transfer RNA; tRNA
Coloring options: