IL_5J4C_087

3D structure

PDB id

5J4C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCCG*UGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4C_087 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.3749

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5J4C|1|1A|C|2160
5J4C|1|1A|C|2161
5J4C|1|1A|C|2162
5J4C|1|1A|G|2163
*
5J4C|1|1A|U|2172
5J4C|1|1A|G|2173
5J4C|1|1A|G|2174
5J4C|1|1A|G|2175

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1k

30S ribosomal protein S11