IL_5J4C_157

3D structure

PDB id

5J4C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCU*G(2MG)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4C_157 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.1549

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

5J4C|1|1a|G|1050
5J4C|1|1a|C|1051
5J4C|1|1a|U|1052
*
5J4C|1|1a|G|1206
5J4C|1|1a|2MG|1207
5J4C|1|1a|C|1208

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains

Chain 1c

30S ribosomal protein S3

Chain 1n

30S ribosomal protein S14 type Z

Chain 1w

Transfer RNA; tRNA