IL_5J4C_195

3D structure

PDB id

5J4C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5J4C|1|2A|G|801, 5J4C|1|2A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4C_195 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0527

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5J4C|1|2A|G|674
5J4C|1|2A|A|675
5J4C|1|2A|A|676
5J4C|1|2A|A|677
5J4C|1|2A|C|678
*
5J4C|1|2A|G|799
5J4C|1|2A|A|800
5J4C|1|2A|G|801
5J4C|1|2A|A|802
5J4C|1|2A|U|803
5J4C|1|2A|A|804
5J4C|1|2A|G|805
5J4C|1|2A|C|806

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15