IL_5J4C_306

3D structure

PDB id

5J4C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

5J4C|1|2a|U|244, 5J4C|1|2a|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4C_306 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0796

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.4

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

5J4C|1|2a|C|242
5J4C|1|2a|A|243
5J4C|1|2a|U|244
5J4C|1|2a|C|245
5J4C|1|2a|A|246
5J4C|1|2a|G|247
*
5J4C|1|2a|C|277
5J4C|1|2a|G|278
5J4C|1|2a|A|279
5J4C|1|2a|C|280
5J4C|1|2a|G|281
5J4C|1|2a|A|282
5J4C|1|2a|C|283
5J4C|1|2a|G|284

Current chains

Chain 2a

16S ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2q

30S ribosomal protein S17