IL_5J4D_015

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCAAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_015 not in the Motif Atlas

Homologous match to IL_5J7L_018

Geometric discrepancy: 0.1042

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

5J4D|1|A|G|371
5J4D|1|A|C|372
5J4D|1|A|A|373
5J4D|1|A|A|374
5J4D|1|A|U|375
*
5J4D|1|A|A|389
5J4D|1|A|C|390

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain YA

30S ribosomal protein S16