IL_5J4D_026
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGAAAGAC*GGGGAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_026 not in the Motif Atlas
- Homologous match to IL_4LFB_026
- Geometric discrepancy: 0.1272
- The information below is about IL_4LFB_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04211.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
5J4D|1|A|U|605
5J4D|1|A|G|606
5J4D|1|A|A|607
5J4D|1|A|A|608
5J4D|1|A|A|609
5J4D|1|A|G|610
5J4D|1|A|A|611
5J4D|1|A|C|612
*
5J4D|1|A|G|628
5J4D|1|A|G|629
5J4D|1|A|G|630
5J4D|1|A|G|631
5J4D|1|A|A|632
5J4D|1|A|G|633
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain MA
- 30S ribosomal protein S4
- Chain QA
- 30S ribosomal protein S8
- Chain YA
- 30S ribosomal protein S16
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