IL_5J4D_027

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_027 not in the Motif Atlas

Geometric match to IL_1G1X_001

Geometric discrepancy: 0.0746

The information below is about IL_1G1X_001

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

5J4D|1|A|G|654
5J4D|1|A|A|655
*
5J4D|1|A|U|751
5J4D|1|A|G|752
5J4D|1|A|A|753
5J4D|1|A|C|754

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain QA

30S ribosomal protein S8

Chain XA

30S ribosomal protein S15