IL_5J4D_031
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAGUAG*CGCAGAUAC
- Length
- 15 nucleotides
- Bulged bases
- 5J4D|1|A|A|702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_031 not in the Motif Atlas
- Homologous match to IL_4LFB_031
- Geometric discrepancy: 0.1212
- The information below is about IL_4LFB_031
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_95727.1
- Basepair signature
- cWW-L-tSH-L-tHW-tHS-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
5J4D|1|A|G|683
5J4D|1|A|A|684
5J4D|1|A|G|685
5J4D|1|A|U|686
5J4D|1|A|A|687
5J4D|1|A|G|688
*
5J4D|1|A|C|699
5J4D|1|A|G|700
5J4D|1|A|C|701
5J4D|1|A|A|702
5J4D|1|A|G|703
5J4D|1|A|A|704
5J4D|1|A|U|705
5J4D|1|A|A|706
5J4D|1|A|C|707
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain TA
- 30S ribosomal protein S11
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