IL_5J4D_051
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UACAAAG*CAAAAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_051 not in the Motif Atlas
- Homologous match to IL_4LFB_051
- Geometric discrepancy: 0.08
- The information below is about IL_4LFB_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_12056.1
- Basepair signature
- cWW-L-R-R-bif-cWW
- Number of instances in this motif group
- 2
Unit IDs
5J4D|1|A|U|1247
5J4D|1|A|A|1248
5J4D|1|A|C|1249
5J4D|1|A|A|1250
5J4D|1|A|A|1251
5J4D|1|A|A|1252
5J4D|1|A|G|1253
*
5J4D|1|A|C|1284
5J4D|1|A|A|1285
5J4D|1|A|A|1286
5J4D|1|A|A|1287
5J4D|1|A|A|1288
5J4D|1|A|A|1289
5J4D|1|A|G|1290
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain DB
- 30S ribosomal protein Thx
- Chain PA
- 30S ribosomal protein S7
- Chain RA
- 30S ribosomal protein S9
- Chain SA
- 30S ribosomal protein S10
- Chain WA
- 30S ribosomal protein S14 type Z
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