IL_5J4D_055

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_055 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.0962

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5J4D|1|A|C|1303
5J4D|1|A|G|1304
5J4D|1|A|G|1305
5J4D|1|A|A|1306
5J4D|1|A|U|1307
5J4D|1|A|U|1308
*
5J4D|1|A|A|1329
5J4D|1|A|U|1330
5J4D|1|A|G|1331
5J4D|1|A|A|1332
5J4D|1|A|A|1333
5J4D|1|A|G|1334

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain DB

30S ribosomal protein Thx

Chain VA

30S ribosomal protein S13