IL_5J4D_070
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGAGUAG*CGAAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_070 not in the Motif Atlas
- Homologous match to IL_9DFE_007
- Geometric discrepancy: 0.0476
- The information below is about IL_9DFE_007
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
5J4D|1|B|U|239
5J4D|1|B|G|240
5J4D|1|B|A|241
5J4D|1|B|G|242
5J4D|1|B|U|243
5J4D|1|B|A|244
5J4D|1|B|G|245
*
5J4D|1|B|C|253
5J4D|1|B|G|254
5J4D|1|B|A|255
5J4D|1|B|A|256
5J4D|1|B|A|257
5J4D|1|B|G|258
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain FA
- 50S ribosomal protein L35
- Chain M
- 50S ribosomal protein L15
Coloring options: