IL_5J4D_081
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 5J4D|1|B|G|801, 5J4D|1|B|G|805
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_081 not in the Motif Atlas
- Homologous match to IL_5J7L_260
- Geometric discrepancy: 0.0574
- The information below is about IL_5J7L_260
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_54041.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
5J4D|1|B|G|674
5J4D|1|B|A|675
5J4D|1|B|A|676
5J4D|1|B|A|677
5J4D|1|B|C|678
*
5J4D|1|B|G|799
5J4D|1|B|A|800
5J4D|1|B|G|801
5J4D|1|B|A|802
5J4D|1|B|U|803
5J4D|1|B|A|804
5J4D|1|B|G|805
5J4D|1|B|C|806
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain G
- 50S ribosomal protein L4
- Chain M
- 50S ribosomal protein L15
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