IL_5J4D_088

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

5J4D|1|B|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_088 not in the Motif Atlas

Homologous match to IL_9DFE_023

Geometric discrepancy: 0.1808

The information below is about IL_9DFE_023

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

5J4D|1|B|C|844
5J4D|1|B|G|845
5J4D|1|B|C|846
*
5J4D|1|B|G|931
5J4D|1|B|G|932
5J4D|1|B|A|933
5J4D|1|B|G|934

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain AA

50S ribosomal protein L30