IL_5J4D_090
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGUAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_090 not in the Motif Atlas
- Homologous match to IL_9DFE_026
- Geometric discrepancy: 0.0763
- The information below is about IL_9DFE_026
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_38862.5
- Basepair signature
- cWW-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5J4D|1|B|U|858
5J4D|1|B|G|859
5J4D|1|B|U|860
5J4D|1|B|A|861
5J4D|1|B|G|862
*
5J4D|1|B|C|915
5J4D|1|B|G|916
5J4D|1|B|A|917
5J4D|1|B|A|918
5J4D|1|B|G|919
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain C
- 5S ribosomal RNA; 5S rRNA
- Chain N
- 50S ribosomal protein L16
- Chain X
- 50S ribosomal protein L27
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