IL_5J4D_100
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CCCCCAAG*CG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_100 not in the Motif Atlas
- Homologous match to IL_5J7L_278
- Geometric discrepancy: 0.0848
- The information below is about IL_5J7L_278
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
5J4D|1|B|C|1004
5J4D|1|B|C|1005
5J4D|1|B|C|1006
5J4D|1|B|C|1007
5J4D|1|B|C|1008
5J4D|1|B|A|1009
5J4D|1|B|A|1010
5J4D|1|B|G|1011
*
5J4D|1|B|C|1150
5J4D|1|B|G|1151
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain K
- 50S ribosomal protein L13
- Chain R
- 50S ribosomal protein L20
Coloring options: