IL_5J4D_111
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AUGAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_111 not in the Motif Atlas
- Homologous match to IL_9DFE_048
- Geometric discrepancy: 0.058
- The information below is about IL_9DFE_048
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.4
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
5J4D|1|B|A|1262
5J4D|1|B|U|1263
5J4D|1|B|G|1264
5J4D|1|B|A|1265
5J4D|1|B|G|1266
5J4D|1|B|U|1267
5J4D|1|B|A|1268
5J4D|1|B|A|1269
*
5J4D|1|B|U|2011
5J4D|1|B|G|2012
5J4D|1|B|A|2013
5J4D|1|B|A|2014
5J4D|1|B|A|2015
5J4D|1|B|U|2016
5J4D|1|B|U|2017
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain CA
- 50S ribosomal protein L32
- Chain G
- 50S ribosomal protein L4
- Chain T
- 50S ribosomal protein L22
Coloring options: