IL_9DFE_048

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

9DFE|1|1A|A|1262
9DFE|1|1A|U|1263
9DFE|1|1A|G|1264
9DFE|1|1A|A|1265
9DFE|1|1A|G|1266
9DFE|1|1A|U|1267
9DFE|1|1A|A|1268
9DFE|1|1A|A|1269
*
9DFE|1|1A|U|2011
9DFE|1|1A|G|2012
9DFE|1|1A|A|2013
9DFE|1|1A|A|2014
9DFE|1|1A|A|2015
9DFE|1|1A|U|2016
9DFE|1|1A|U|2017

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1F

50S ribosomal protein L4

Chain 1R

50S ribosomal protein L17

Chain 1W

50S ribosomal protein L22