IL_5J4D_129
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- ACUCUG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 5J4D|1|B|G|1992
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_129 not in the Motif Atlas
- Geometric match to IL_8VTW_066
- Geometric discrepancy: 0.063
- The information below is about IL_8VTW_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_06455.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
5J4D|1|B|A|1669
5J4D|1|B|C|1670
5J4D|1|B|U|1671
5J4D|1|B|C|1672
5J4D|1|B|U|1673
5J4D|1|B|G|1674
*
5J4D|1|B|C|1990
5J4D|1|B|U|1991
5J4D|1|B|G|1992
5J4D|1|B|U|1993
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain F
- 50S ribosomal protein L3
- Chain L
- 50S ribosomal protein L14
Coloring options: