IL_5J4D_142

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

5J4D|1|B|U|2068

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_142 not in the Motif Atlas

Homologous match to IL_7A0S_075

Geometric discrepancy: 0.0762

The information below is about IL_7A0S_075

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

149

Unit IDs

5J4D|1|B|G|2067
5J4D|1|B|U|2068
5J4D|1|B|G|2069
*
5J4D|1|B|C|2442
5J4D|1|B|C|2443

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L4

Chain M

50S ribosomal protein L15