IL_5J4D_143

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

5J4D|1|B|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_143 not in the Motif Atlas

Homologous match to IL_9DFE_081

Geometric discrepancy: 0.0666

The information below is about IL_9DFE_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

5J4D|1|B|G|2070
5J4D|1|B|A|2071
*
5J4D|1|B|U|2438
5J4D|1|B|A|2439
5J4D|1|B|C|2440
5J4D|1|B|C|2441

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L2

Chain IA

Transfer RNA; tRNA