IL_5J4D_147
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCGUAGGAUAG*CC
- Length
- 13 nucleotides
- Bulged bases
- 5J4D|1|B|A|2119
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_147 not in the Motif Atlas
- Geometric match to IL_3U4M_002
- Geometric discrepancy: 0.2651
- The information below is about IL_3U4M_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_32056.1
- Basepair signature
- cWW-L-cWW-L-L-tWH-R-L-R-L
- Number of instances in this motif group
- 3
Unit IDs
5J4D|1|B|G|2110
5J4D|1|B|C|2111
5J4D|1|B|G|2112
5J4D|1|B|U|2113
5J4D|1|B|A|2114
5J4D|1|B|G|2115
5J4D|1|B|G|2116
5J4D|1|B|A|2117
5J4D|1|B|U|2118
5J4D|1|B|A|2119
5J4D|1|B|G|2120
*
5J4D|1|B|C|2178
5J4D|1|B|C|2179
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain D
- Transfer RNA; tRNA
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