IL_5J4D_166
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUCU*AUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_166 not in the Motif Atlas
- Homologous match to IL_9DFE_103
- Geometric discrepancy: 0.0628
- The information below is about IL_9DFE_103
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.12
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 22
Unit IDs
5J4D|1|B|C|2680
5J4D|1|B|C|2681
5J4D|1|B|U|2682
5J4D|1|B|C|2683
5J4D|1|B|U|2684
*
5J4D|1|B|A|2725
5J4D|1|B|U|2726
5J4D|1|B|G|2727
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain F
- 50S ribosomal protein L3
- Chain L
- 50S ribosomal protein L14
- Chain O
- 50S ribosomal protein L17
- Chain Q
- 50S ribosomal protein L19
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